RNAlytics - Services

Bulk RNA-seq Analysis

Bulk RNA-seq remains one of the most powerful tools for understanding gene expression changes across tissues, conditions, and disease states. We offer comprehensive bulk RNA-seq analysis services, including:

• Experimental design consultation
• Quality control and alignment
• Differential expression analysis
• Pathway and gene-set enrichment
• Custom visualizations and publication-ready figures
• Biological interpretation grounded in immunology and cell biology

Our analyses emphasize both statistical robustness and biological meaning, ensuring your insights are clear, rigorous, and actionable.

Single-Cell RNA-seq & Multi-omic Analysis

Single-cell technologies allow researchers to uncover cellular heterogeneity, identify rare populations, and define detailed molecular phenotypes. We provide advanced single-cell analysis workflows, including:

• Cell QC, filtering, and normalization
• Dimensionality reduction and clustering
• Marker identification & cell-type annotation
• Trajectory and pseudotime analysis
• Integration of multiple datasets or batches
• Custom immunology-focused annotations
• Interactive data reports and figure generation

We help you translate single-cell results into biological insights that are intuitive, reproducible, and publication-ready.

Spatial Transcriptomics Analysis

Spatial transcriptomics bridges gene expression with anatomical context, revealing where biological signals originate and how cells interact within tissues. We provide support for leading platforms such as 10x Visium, NanoString CosMx, and others.

Our services include:

• Tissue-level QC and segmentation
• Spatially resolved clustering & differential expression
• Cell–cell interaction and neighborhood analysis
• Integration with scRNA-seq for enhanced annotation
• High-resolution spatial visualizations and figure preparation
• Biological interpretation focused on tissue architecture and immune microenvironments

We help you uncover spatial patterns that clarify disease mechanisms, therapeutic responses, and tissue-level complexity.

Proteomic Data Analysis

Proteomics provides a functional layer of insight that complements transcriptomic profiling, helping teams understand how molecular changes translate to protein abundance, pathway activity, and cellular phenotype. We offer comprehensive proteomics analysis services, including:

• Mass-spec data QC, normalization, and statistical analysis
• Differential protein expression
• Pathway, network, and systems-level interpretation
• Integration with RNA-seq and single-cell data
• Custom visualizations and publication-ready figures
• Biological interpretation grounded in immunology and molecular biology

Our integrated approach ensures your proteomic data is analyzed within a coherent biological framework, enabling multi-layered insights that drive discovery.

Our Workflow

Initial Consultation
We discuss your project, experimental design, and scientific goals.
Data Receipt & QC
Your raw data undergoes rigorous quality control to ensure reliability.
Customized Analysis
We build a tailored pipeline aligned with your biological questions.
Iterative Review
Results are shared through interactive reports and regular check-ins.
Final Deliverables
You receive publication-ready figures, code (if requested), and a comprehensive report.
Ongoing Support
We remain available for manuscript edits, presentations, or follow-up analyses.

*All data generated from previously published, publicly available datasets

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